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Home page Publications Archives (scientific publications from 2002 to 2014) 2014

2014

Arthur, R. K., Ma, L., Slattery, M., Spokony, R. F., Ostapenko, A., Nègre, N., White, K. P. 2014. Evolution of H3K27me3-marked chromatin is linked to gene expression evolution and to patterns of gene duplication and diversification. Genome Research, 24 (7), 1115-1124. DOI : 10.1101/gr.162008.113. http://prodinra.inra.fr/record/278931

Audiot, P., Jouan, V., Frayssinet, M., Volkoff, A.-N., Bourguet, D. 2014. Isolation and characterization of microsatellites in the endoparasitic ichneumonid wasp carrying a polydnavirus Hyposoter didymator. Conservation Genetics Resources, 6 (1), 21-23. DOI : 10.1007/s12686-013-0036-0. http://prodinra.inra.fr/record/256687

Benfarhat-Touzri, D., Amira, A. B., Khedher, S. B., Givaudan, A., Jaoua, S., Tounsi, S. 2014. Combinatorial effect of Bacillus thuringiensis kurstaki and Photorhabdus luminescens against Spodoptera littoralis (Lepidoptera: Noctuidae). Journal of Basic Microbiology, 54 (11), 1160-1165. DOI : 10.1002/jobm.201300142. http://prodinra.inra.fr/record/269301

Diomande, S. E., Chamot, S., Antolinos, V., Vasai, F., Guinebretiere, M. H., Bornard, I., Nguyen-the, C., Broussolle, V., Brillard, J., 2014. The CasKR two-component system is required for the growth of mesophilic and psychrotolerant Bacillus cereus strains at low temperatures. Applied and Environmental Microbiology, 80 (8), 2493-2503. DOI : 10.1128/aem.00090-14. http://prodinra.inra.fr/record/261611

Doremus, T., Darboux, I., Cusson, M., Ravallec, M., Jouan, V., Frayssinet, M., Stoltz, D. B., Webb, B. A., Volkoff, A.-N. 2014. Specificities of ichnoviruses associated with campoplegine wasps: genome, genes and role in host–parasitoid interaction. Current Opinion in Insect Science, 6, 44-51. DOI : 10.1016/j.cois.2014.09.017. http://prodinra.inra.fr/record/285352

Doremus, T., Cousserans, F., Gyapay, G., Jouan, V., Milano, P., Wajnberg, E., Darboux, I., Cônsoli, F. L., Volkoff, A.-N. 2014. Extensive transcription analysis of the Hyposoter didymator ichnovirus genome in permissive and non-permissive lepidopteran host species. Plos One, 9 (8), e104072. DOI : 10.1371/journal.pone.0104072. http://prodinra.inra.fr/record/271776

Ferreira, T., van Reenen, C. A., Endo, A., Tailliez, P., Pages, S., Spröer, C., Malan, A. P., Dicks, L. M. T. 2014. Photorhabdus heterorhabditis sp nov., a symbiont of the entomopathogenic nematode Heterorhabditis zealandica. International Journal of Systematic and Evolutionary Microbiology, 64 (5), 1540-1545. DOI : 10.1099/ijs.0.059840-0. http://prodinra.inra.fr/record/274852

François, S., Bernardo, P., Filloux, D., Roumagnac, P., Yaverkovski, N., Froissart, R., Ogliastro, M.-H. 2014. A novel itera-like densovirus isolated by viral metagenomics from the sea barley Hordeum marinum. Genome Announcements, 2 (6). DOI : 10.1128/genomeA.01196-14. http://prodinra.inra.fr/record/279467

Gauthier, N., Clouet, C., Perrakis, A., Kapantaidaki, D., Peterschmitt, M., Tsagkarakou, A., 2014. Genetic structure of Bemisia tabaci Med populations from home-range countries, inferred by nuclear and cytoplasmic markers: impact on the distribution of the insecticide resistance genes. Pest Management Science, 70, 1477-1491. DOI : 10.1002/ps.3733.

Gualtieri, M., Ogier, J.-C., Pages, S., Givaudan, A., Gaudriault, S., 2014. Draft genome sequence and annotation of the entomopathogenic bacterium Xenorhabdus szentirmaii strain DSM16338. Genome Announcements, 2 (2). DOI : 10.1128/genomeA.00190-14. http://prodinra.inra.fr/record/269300

Guimaraes, J. C., Rocha, M., Arkin, A. P., Cambray, G. 2014. D-Tailor: automated analysis and design of DNA sequences. Bioinformatics, 30, 1087-1094. DOI : 10.1093/bioinformatics/btt742.

Kronenwerth, M., Bozhüyük, K. A. J., Kahnt, A. S., Steinhilber, D., Gaudriault, S., Kaiser, M., Bode, H. B. 2014. Characterisation of taxlllaids A-G; natural products from Xenorhabdus indica. Chemistry, 20 (52), 17478-17487. DOI : 10.1002/chem.201403979. http://prodinra.inra.fr/record/280363

Legeai, F., Gimenez, S., Duvic, B., Escoubas, J.-M., Gosselin-Grenet, A.-S., Blanc, F., Cousserans, F., Seninet, I., Bretaudeau, A., Mutel, D., Girard, P.-A., Monsempes, C., Magdelenat, G., Hilliou, F., Feyereisen, R., Ogliastro, M.-H., Volkoff, A.-N., Jacquin-Joly, E., D'Alençon, E., Negre, N., Fournier, P. 2014. Establishment and analysis of a reference transcriptome for Spodoptera frugiperda. BMC Genomics, 15, 704. DOI : 10.1186/1471-2164-15-704. http://prodinra.inra.fr/record/269917

Li, C., Zhang, Y., Li, J., Kong, L., Hu, H., Pan, H., Xu, L., Deng, Y., Li, Q., Jin, L., Yu, H., Chen, Y., Liu, B., Yang, L., Liu, S., Zhang, Y., Lang, Y., Xia, J., He, W., Shi, Q., Subramanian, S., Millar, C. D., Meader, S., Rands, C. M., Fujita, M. K., Greenwold, M. J., Castoe, T. A., Pollock, D. D., Gu, W., Nam, K., Ellegren, H., Ho, S. Y., Burt, D. W., Ponting, C. P., Jarvis, E. D., Gilbert, M. T., Yang, H., Wang, J., Lambert, D. M., Wang, J., Zhang, G., 2014. Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment. Gigascience, 3, 27. DOI : 10.1186/2047-217x-3-27. http://prodinra.inra.fr/record/369700

Mouammine, A., Lanois, A., Pages, S., Lafay, B., Molle, V., Canova, M., Girard, P.-A., Duvic, B., Givaudan, A., Gaudriault, S. 2014. Ail and PagC-related proteins in the entomopathogenic bacteria of Photorhabdus genus. Plos One, 9 (10). DOI : 10.1371/journal.pone.0110060. http://prodinra.inra.fr/record/273002

Ogier, J.-C., Pages, S., Bisch, G., Chiapello, H., Médigue, C., Rouy, Z., Teyssier, C., Vincent, S., Tailliez, P., Givaudan, A., Gaudriault, S. 2014. Attenuated virulence and genomic reductive evolution in the entomopathogenic bacterial symbiont species, Xenorhabdus poinarii. Genome Biology and Evolution, 6, 1495-1513. DOI : 10.1093/gbe/evu119. http://prodinra.inra.fr/record/262449

Shapiro-Ilan, D. I., Blackburn, D., Duncan, L., El-Borai, F. E., Koppenhöfer, H., Tailliez, P., Adams, B. J. 2014. Characterization of biocontrol traits in Heterorhabditis floridensis: A species with broad temperature tolerance. Journal of Nematology, 46 (4), 336-345. http://prodinra.inra.fr/record/280905

Sicard, M., Raimond, M., Gaudriault, S., Lanois, A., Pages, S., Debenest, C., Braquart-Varnier, C., Givaudan, A. 2014. Putative toxins from the entomopathogenic bacterium Photorhabdus luminescens kill Armadillidium vulgare (Terrestrial isopod). Biological Control, 69, 40-44. DOI : 10.1016/j.biocontrol.2013.10.011. http://prodinra.inra.fr/record/269302

Slattery, M., Ma, L., Spokony, R. F., Arthur, R. K., Kheradpour, P., Kundaje, A., Nègre, N., Crofts, A., Ptashkin, R., Zieba, J., Ostapenko, A., Suchy, S., Victorsen, A., Jameel, N., Grundstad, A. J., Gao, W., Moran, J. R., Rehm, E. J., Grossman, R. L., Kellis, M., White, K. P. 2014. Diverse patterns of genomic targeting by transcriptional regulators in Drosophila melanogaster. Genome Research, 24 (7), 1224-1235. DOI : 10.1101/gr.168807.113. http://prodinra.inra.fr/record/278932

Tagu, D., Colbourne, J. K., Nègre, N. 2014. Genomic data integration for ecological and evolutionary traits in non-model organisms. BMC Genomics, 15. DOI : 10.1186/1471-2164-15-490. http://prodinra.inra.fr/record/281892

Vayssier Taussat, M., Albina, E., Citti, C., Cosson, J.-F., Jacques, M. A., Lebrun, M.-H., Le Loir, Y., Ogliastro, M.-H., Petit, M.-A., Roumagniac, P., Candresse, T. 2014. Shifting the paradigm from pathogens to pathobiome: new concepts in the light of meta-omics. Frontiers in Cellular and Infection Microbiology, 4, 29. DOI : 10.3389/fcimb.2014.00029. http://prodinra.inra.fr/record/324303

Vogelmann, J., Le Gall, A., Dejardin, S., Allemand, F., Gamot, A., Labesse, G., Cuvier, O., Nègre, N., Cohen-Gonsaud, M., Margeat, E., Nöllmann, M. 2014. Chromatin insulator factors involved in long-range DNA interactions and their role in the folding of the Drosophila genome. Plos Genetics, 10 (8). DOI : 10.1371/journal.pgen.1004544. http://prodinra.inra.fr/record/304965