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Dernière mise à jour : Mai 2018

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Publications, Patents and PhD Thesis

Scientific production since 2006

Publications

2019

Pigeyre, L., Schatz, M., Ravallec, M., Gasmi, L., Negre, N., Clouet, C., Seveno, M., El Koulali, K., Decourcelle, M., Guerardel, Y., Cot, D., Dupressoir, T., Gosselin-Grenet, A.-S., Ogliastro, M.-H. 2019. Interaction of a densovirus with glycans of the peritrophic matrix mediates oral infection of the Lepidopteran pest Spodoptera frugiperdaViruses, 11 (9), 21 p. DOI : 10.3390/v11090870. http://prodinra.inra.fr/record/486352

2018

Chen, Z.-H., Zhang, M., Lv, F.-H., Ren, Li, W.-R., Liu, M.-J., Nam, K. W., Bruford, M. W., Li, M.-H. 2018. Contrasting patterns of genomic diversity reveal accelerated genetic drift but reduced directional selection on X-chromosome in wild and domestic sheep species. Genome Biology and Evolution, 10 (5), 1282-1297. DOI : 10.1093/gbe/evy085. http://prodinra.inra.fr/record/442635

Moné, Y., Nhim, S., Gimenez, S., Legeai, F., Seninet, I., Parrinello, H., Nègre, N., D'Alençon, E. 2018. Characterization and expression profiling of microRNAs in response to plant feeding in two host-plant strains of the lepidopteran pest Spodoptera frugiperdaBMC Genomics, 19 (1), 15 p. DOI : 10.1186/s12864-018-5119-6. http://prodinra.inra.fr/record/452867

Orsucci, M., Audiot, P., Nidelet, S., Dorkeld, F., Pommier, A., Vabre, M., Severac, D., Rohmer, M., Gschloessl, B., Streiff, R. 2018. Transcriptomic response of female adult moths to host and non-host plants in two closely related species. BMC Evolutionary Biology, 18. DOI : 10.1186/s12862-018-1257-3. http://prodinra.inra.fr/record/448988

Orsucci, M., Audiot, P., Dorkeld, F., Pommier, A., Vabre, M., Gschloessl, B., Rialle, S., Severac, D., Bourguet, D., Streiff, R. 2018. Larval transcriptomic response to host plants in two related phytophagous lepidopteran species: implications for host specialization and species divergence. BMC Genomics, 19. DOI : 10.1186/s12864-018-4589-x. http://prodinra.inra.fr/record/428807

Rizk, F., Laverdure, S., D'Alençon, E., Bossin, H., Dupressoir, T. 2018. Linear Lepidopteran ambidensovirus 1 sequences drive random integration of a reporter gene in transfected Spodoptera frugiperda cells. PeerJ, 6, 23 p. DOI : 10.7717/peerj.4860. http://prodinra.inra.fr/record/433581

2017

Bonneaud, N., Layalle, S., Colomb, S., Jourdan, C., Ghysen, A., Severac, D., Dantec, C., Negre, N., Maschat, F. 2017. Control of nerve cord formation by Engrailed and Gooseberry-Neuro: A multi-step, coordinated process. Developmental Biology, 432 (2), 273-285. DOI : 10.1016/j.ydbio.2017.10.018. http://prodinra.inra.fr/record/444098

Cheng, T., Wu, J., Wu, Y., Chilukuri, R. V., Huang, L., Yamamoto, K., Feng, L., Li, W., Chen, Z., Guo, H., Liu, J., Li, S., Wang, X., Peng, L., Liu, D., Guo, Y., Fu, B., Li, Z., Liu, C., Chen, Y., Tomar, A., Hilliou, F., Montagné, N., Jacquin-Joly, E., D'Alençon, E., Seth, R. K., Bhatnagar, R. K., Jouraku, A., Shiotsuki, T., Kadono-Okuda, K., Promboon, A., Smagghe, G., Arunkumar, K. P., Kishino, H., Goldsmith, M. R., Feng, Q., Xia, Q., Mita, K. 2017. Genomic adaptation to polyphagy and insecticides in a major East Asian noctuid pest. Nature Ecology and Evolution, 1 (11), 1747-1756. DOI : 10.1038/s41559-017-0314-4. http://prodinra.inra.fr/record/417608

Erclik, T., Li, X., Courgeon, M., Bertet, C., Chen, Z., Baumert, R., Ng, J., Koo, C., Arain, U., Behnia, R., del Valle Rodriguez, A., Senderowicz, L., Negre, N., White, K.P., Desplan, C. 2017. Integration of temporal and spatial patterning generates neural diversity. Nature, 541 (7637), 365-370, 10.1038/nature20794. http://prodinra.inra.fr/record/463792

Gouin, A., Bretaudeau, A., Nam, K., Gimenez, S., Aury, J.-M., Duvic, B., Hilliou, F., Durand, N., Montagné, N., Darboux, I., Kuwar, S., Chertemps, T., Siaussat, D., Bretschneider, A., Moné, Y., Ahn, S.-J., Hänniger, S., Gosselin-Grenet, A.-S., Neunemann, D., Maumus, F., Luyten, I., Labadie, K., Xu, W., Koutroumpa, F., Escoubas, J.-M., Llopis, A., Maïbèche-Coisne, M., Salasc, F., Tomar, A., Anderson, A. R., Khan, S. A., Dumas, P., Orsucci, M., Guy, J., Belser, C., Alberti, A., Noel, B., Couloux, A., Mercier, J., Nidelet, S., Dubois, E., Liu, N.-Y., Boulogne, I., Mirabeau, O., Le Goff, G., Gordon, K., Oakeshott, J., Consoli, F. L., Volkoff, A.-N., Fescemyer, H. W., Marden, J. H., Luthe, D. S., Herrero, S., Heckel, D. G., Wincker, P., Kergoat, G. J., Amselem, J., Quesneville, H., Groot, A. T., Jacquin-Joly, E., Nègre, N., Lemaitre, C., Legeai, F., D'Alençon, E., Fournier, P. 2017. Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges. Scientific Reports, 7 (1), 11816. DOI : 10.1038/s41598-017-10461-4. http://prodinra.inra.fr/record/411711

Nam, K. W., Lee, K. W., Chung, O., Yim, H.-S., Cha, S.-S., Lee, S.-W., Jun, J., Cho, Y. S., Bhak, J., de Magalhaes, J. P., Lee, J.-H., Jeong, J.-Y. 2017. Analysis of the FGF gene family provides insights into aquatic adaptation in cetaceans. Scientific Reports, 7, 40233. DOI : 10.1038/srep40233. http://prodinra.inra.fr/record/396314

Nam, K., Munch, K., Mailund, T., Nater, A., Greminger, M. P., Krutzen, M., Marques-Bonet, T., Schierup, M. H., 2017. Evidence that the rate of strong selective sweeps increases with population size in the great apes. Proceedings of the National Academy of Sciences of the United States of America, 114 (7), 1613-1618. DOI : 10.1073/pnas.1605660114. http://prodinra.inra.fr/record/420795

2016

Esquer Garrigos, Y., Greenfield, M. D., Party, V., Streiff, R. 2016. Characterization of 16 novel microsatellite loci for Ephippiger diurnus (Orthoptera: Tettigoniidae) using pyrosequencing technology and cross-species amplification. European Journal of Entomology, 113, 302- 306. DOI : 10.14411/eje.2016.037. http://prodinra.inra.fr/record/351529

Greenfield, M. D., Esquer Garrigos, Y., Streiff, R., Party, V., 2016. Animal choruses emerge from receiver psychology. Scientific Reports, 6, 9. DOI : 10.1038/srep34369.

Lobon, I., Tucci, S., de Manuel, M., Ghirotto, S., Benazzo, A., Prado-Martinez, J., Lorente-Galdos, B., Nam, K., Dabad, M., Hernandez-Rodriguez, J., Comas, D., Navarro, A., Schierup, M. H., Andres, A. M., Barbujani, G., Hvilsom, C., Marques-Bonet, T. 2016. Demographic history of the genus Pan inferred from whole mitochondrial genome reconstructions. Genome Biology and Evolution, 8, 2020-2030. DOI : 10.1093/gbe/evw124. http://prodinra.inra.fr/record/369705

Munch, K., Nam, K. W., Schierup, M. H., Mailund, T. 2016. Selective sweeps across twenty millions years of primate evolution. Molecular Biology and Evolution, 33 (12), 3065-3074. DOI : 10.1093/molbev/msw199. http://prodinra.inra.fr/record/387066

Orsucci, M., Audiot, P., Pommier, A., Raynaud, C., Ramora, B., Zanetto, A., Bourguet, D., Streiff, R., 2016. Host specialization involving attraction, avoidance and performance, in two phytophagous moth species. Journal of Evolutionary Biology, 29 (1), 114-125. DOI : 10.1111/jeb.12766. http://prodinra.inra.fr/record/351252

2015

Dumas, P., Barbut, J., Le Ru, B., Silvain, J.-F., Clamens, A. L., D'Alençon, E., Kergoat, G. 2015. Phylogenetic molecular species delimitations unravel potential new species in the pest genus Spodoptera Guenée, 1852 (Lepidoptera, Noctuidae). Plos One, 10 (4), e0122407. DOI : 10.1371/journal.pone.0122407. http://prodinra.inra.fr/record/309986 

Dumas, P., Legeai, F., Lemaitre, C., Scaon, E., Orsucci, M., Labadie, K., Gimenez, S., Clamens, A. L., Henri, H., Vavre, F., Aury, J. M., Fournier, P., Kergoat, G., D'Alençon, E. 2015. Spodoptera frugiperda (Lepidoptera: Noctuidae) host-plant variants: two host strains or two distinct species ? Genetica, 143 (3), 305-316. DOI : 10.1007/s10709-015-9829-2. http://prodinra.inra.fr/record/306622

Dutheil, J. Y., Munch, K., Nam, K., Mailund, T., Schierup, M. H., 2015. Strong selective sweeps on the X chromosome in the human-chimpanzee ancestor explain its low divergence. PLoS Genetics, 11, e1005451. DOI : 10.1371/journal.pgen.1005451. http://prodinra.inra.fr/record/369698

Nam, K., Munch, K., Hobolth, A., Dutheil, J. Y., Veeramah, K. R., Woerner, A. E., Hammer, M. F., Mailund, T., Schierup, M. H. 2015. Extreme selective sweeps independently targeted the X chromosomes of the great apes. Proceedings of the National Academy of Sciences of the United States of America, 112, 6413-6418. DOI : 10.1073/pnas.1419306112. http://prodinra.inra.fr/record/369699

Simon, J.-C., D'Alençon, E., Guy, E., Jacquin-Joly, E., Jaquiéry, J., Nouhaud, P., Peccoud, J., Sugio, A., Streiff, R. 2015. Genomics of adaptation to host-plants in herbivorous insects. Briefings in Functional Genomics, 14 (6), 413-423. DOI : 10.1093/bfgp/elv015. http://prodinra.inra.fr/record/310218

2014

Arthur, R. K., Ma, L., Slattery, M., Spokony, R. F., Ostapenko, A., Nègre, N., White, K. P. 2014. Evolution of H3K27me3-marked chromatin is linked to gene expression evolution and to patterns of gene duplication and diversification. Genome Research, 24 (7), 1115-1124. DOI : 10.1101/gr.162008.113. http://prodinra.inra.fr/record/278931

Legeai, F., Gimenez, S., Duvic, B., Escoubas, J.-M., Gosselin-Grenet, A.-S., Blanc, F., Cousserans, F., Seninet, I., Bretaudeau, A., Mutel, D., Girard, P.-A., Monsempes, C., Magdelenat, G., Hilliou, F., Feyereisen, R., Ogliastro, M.-H., Volkoff, A.-N., Jacquin-Joly, E., D'Alençon, E., Negre, N., Fournier, P. 2014. Establishment and analysis of a reference transcriptome for Spodoptera frugiperdaBMC Genomics, 15, 704. DOI : 10.1186/1471-2164-15-704. http://prodinra.inra.fr/record/269917

Li, C., Zhang, Y., Li, J., Kong, L., Hu, H., Pan, H., Xu, L., Deng, Y., Li, Q., Jin, L., Yu, H., Chen, Y., Liu, B., Yang, L., Liu, S., Zhang, Y., Lang, Y., Xia, J., He, W., Shi, Q., Subramanian, S., Millar, C. D., Meader, S., Rands, C. M., Fujita, M. K., Greenwold, M. J., Castoe, T. A., Pollock, D. D., Gu, W., Nam, K., Ellegren, H., Ho, S. Y., Burt, D. W., Ponting, C. P., Jarvis, E. D., Gilbert, M. T., Yang, H., Wang, J., Lambert, D. M., Wang, J., Zhang, G., 2014. Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment. Gigascience, 3, 27. DOI : 10.1186/2047-217x-3-27. http://prodinra.inra.fr/record/369700

Slattery, M., Ma, L., Spokony, R. F., Arthur, R. K., Kheradpour, P., Kundaje, A., Nègre, N., Crofts, A., Ptashkin, R., Zieba, J., Ostapenko, A., Suchy, S., Victorsen, A., Jameel, N., Grundstad, A. J., Gao, W., Moran, J. R., Rehm, E. J., Grossman, R. L., Kellis, M., White, K. P. 2014. Diverse patterns of genomic targeting by transcriptional regulators in Drosophila melanogasterGenome Research, 24 (7), 1224-1235. DOI : 10.1101/gr.168807.113. http://prodinra.inra.fr/record/278932

Tagu, D., Colbourne, J. K., Nègre, N. 2014. Genomic data integration for ecological and evolutionary traits in non-model organisms. BMC Genomics, 15. DOI : 10.1186/1471-2164-15-490. http://prodinra.inra.fr/record/281892

Vogelmann, J., Le Gall, A., Dejardin, S., Allemand, F., Gamot, A., Labesse, G., Cuvier, O., Nègre, N., Cohen-Gonsaud, M., Margeat, E., Nöllmann, M. 2014. Chromatin insulator factors involved in long-range DNA interactions and their role in the folding of the Drosophila genome. PLoS Genetics, 10 (8). DOI : 10.1371/journal.pgen.1004544. http://prodinra.inra.fr/record/304965

2013

d’Alençon, E., Bierne, N., Girard, P.-A., Magdelenat, G., Gimenez, S., Seninet, S., Escoubas, J.-M. 2013. Evolutionary history of x-tox genes in three Lepidopteran species: origin, evolution of primary and secondary structure and alternative splicing, generated a repertoire of immune-related proteins. Insect Biochemistry and Molecular Biology, 43 (1), 54-64. DOI : 10.1016/j.ibmb.2012.10.012.

2012

Dumas, P., Clamens, A.-L., Kergoat, G. J., Gimenez, S., d’Alençon, E. 2012. Isolation and characterization of microsatellite loci in the fall armyworm, Spodoptera frugiperda (Lepidoptera, Noctuidae). In : Permanent Genetic Ressources added to Molecular Ecology Resources Database 1 December 2011 – 31 January 2012. Molecular Ecology Resources, 12, 570-572. http://tomato.bio.trinity.edu/manuscripts/12-3/mer-11-0382.pdf.

2011

Stanojcic, S., Gimenez, S., Permal, E., Cousserans, F., Quesneville, H., Fournier, P., d'Alençon, E. 2011. Correlation of rasiRNA expression with heterochromatin formation during development of the holocentric insect Spodoptera frugiperdaPLoS One, 6 (9), e24746. DOI : 10.1371/journal.pone.0024746.

d’Alençon, E., Nègre, N., Stanojcic, S., Alassoeur, B., Gimenez, S., Abd-Alla, A., Juliant, S., Fournier, P. 2011. Characterization of a CENP-B homolog in the holocentric Lepidoptera Spodoptera frugiperdaGene, 485, 91-101.

2010

d’Alençon, E., Sezutsu, H., Legeai, F., Permal, E., Bernard-Samain, S., Gimenez, S., Gagneur, C., Cousserans, F., Shimomura, M., Brun-Barale, A., Flutre, T., Couloux, A., East, P., Gordon, K., Mita, K., Quesneville, H., Fournier, P., Feyereisen, R. 2010. Extensive synteny conservation of holocentric chromosomes in Lepidoptera despite high rates of local genome rearrangements. Proceedings of the National Academy of Sciences of the United States of America, 107(17), 7680-5. DOI : 10.1073/pnas.0910413107.

2006

Negre, V., Hotelier, T., Volkoff, A.-N., Gimenez, S., Cousserans, F., Mita, K., Sabau, X., Rocher, J., Lopez-Ferber, M., d'Alencon, E., Audant, P., Sabourault, C., Bidegainberry, V., Hilliou, F., Fournier, P. 2006. SPODOBASE : an EST database for the lepidopteran crop pest SpodopteraBMC Bioinformatics, 7, 322.

Patents

d’Alençon, E., Stanojcic, S., Cousserans, F., Gimenez, S., Fournier, P., Quesneville, H., Permal, E. 2011. « Molécules utiles pour inhiber le développement d’une larve d’insecte ravageur de culture » Brevet européen 11/01/2011.

PhD Thesis

Sandra NHIM. 2018. Mécanismes de régulation épigénétique chez l'insecte holocentrique ravageur de culture Spodoptera frugiperda, Lépidoptera, Noctuidae. Thèse de doctorat de l'Université de Montpellier, Montpellier, France, sous la direction d'Emmanuelle d'ALENÇON et Nicolas NEGRE. Disponible sur http://www.biu-montpellier.fr/florabium/jsp/nnt.jsp?nnt=2018MONTG086.

Marion ORSUCCI. 2015. Rôle de la spécialisation à la plante hôte et de l'isolement reproducteur dans la divergence de lépidoptères ravageurs de cultures. Thèse de doctorat de l'Université de Montpellier, Montpellier, France, sous la direction de Réjane STREIFF. Disponible sur http://www.biu-montpellier.fr/florabium/jsp/nnt.jsp?nnt=2015MONTS074.

Pascaline DUMAS. 2013. Etude intégrative du statut des deux variants adaptatifs à la plante hôte de Spodoptera frugiperda (Lepidoptera: Noctuidae). Thèse de doctorat en biologie de l'évolution et écologie de l'Université Montpellier 2, Montpellier, France, sous la direction d'Emmanuelle d'ALENÇON et de Gael KERGOAT. Disponible sur https://www.biu-montpellier.fr/florabium/jsp/nnt.jsp?nnt=2013MON20148.